PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459247.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 137aa    MW: 15232.2 Da    PI: 4.4691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091108122216
                     EETTTTEEESSHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnL 16 
                     +C++C+k+Fs +++L
  XP_016459247.1 108 TCEICNKVFSPNYTL 122
                     7********998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129222.47759119IPR011016Zinc finger, RING-CH-type
Gene3DG3DSA:3.30.40.106.4E-1965116IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.1E-1665116No hitNo description
SMARTSM007443.7E-2166113IPR011016Zinc finger, RING-CH-type
PfamPF129061.6E-1367112IPR011016Zinc finger, RING-CH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MVDEFMVCVD RIIIATTCFG ESESVVNGRE ISLLTNNDVA NLSVENNSRE MTSGGEGCSK  60
GSVIRECRIC QEEDEENDME APCACNGTLK FAHRKCIQRW CNKKGDITCE ICNKVFSPNY  120
TLPPARSNPD VMAIDIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776076.11e-97PREDICTED: uncharacterized protein LOC104225893
TrEMBLM1B6294e-66M1B629_SOLTU; Uncharacterized protein
TrEMBLM1B6304e-66M1B630_SOLTU; Uncharacterized protein
TrEMBLM1B6313e-66M1B631_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000378871e-65(Solanum tuberosum)